Volumes 521–522, 15 July 2015, Pages 388–399
Environmental response of an Irish estuary to changing land management practices
  Open Access
Highlights
- •
- Implications of improved environmental practices on nutrient transport were examined.
- •
- Reduced fertiliser usage and timing was linked to reduced estuarine nutrient loadings.
- •
- P and water column chlorophyll improved while N remained stable in the estuary.
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- Nutrient transport through an estuarine system depends on internal nutrient cycling.
Abstract
Anthropogenic
 pressures have led to problems of nutrient over-enrichment and 
eutrophication in estuarine and coastal systems on a global scale. 
Recent improvements in farming practices, specifically a decrease in 
fertiliser application rates, have reduced nutrient loadings in Ireland.
 In line with national and European Directives, monitoring of Irish 
estuarine systems has been conducted for the last 30 years, allowing a 
comparison of the effectiveness of measures undertaken to improve water 
quality and chemical and biological trends. The Blackwater Estuary, 
which drains a large agricultural catchment on the south coast of 
Ireland, has experienced a decrease in calculated nitrogen (N) (17%) and
 phosphorus (P) (20%) loads in the last decade. Monitored long-term 
river inputs reflect the reductions while estuarine P concentrations, 
chlorophyll and dissolved oxygen saturation show concurrent improvement.
 Consistently high N concentrations suggest a decoupling between N loads
 and estuarine responses. This highlights the complex interaction 
between N and P load reductions, and biochemical processes relating to 
remineralisation and primary production which can alter the 
effectiveness of the estuarine filter in reducing nutrient transport to 
the coastal zone. Effective management and reduction of both diffuse and
 point nutrient sources to surface waters require a consideration of the
 processes which may alter the effectiveness of measures in estuarine 
and coastal waters.
Keywords
- Nutrient source apportionment;
- Estuarine eutrophication;
- Agricultural policy measures;
- Mann–Kendall trend analysis;
- Nitrogen and phosphorus river loads
1. Introduction
Increased
 nutrient enrichment derived from the rise of agricultural fertiliser 
use, human population pressures and atmospheric deposition has resulted 
in deleterious impacts on surface waters along the land–ocean continuum 
over past decades (Kronvang et al., 1993 and Boesch, 2002). The European Union has specifically aimed at reducing nutrient inputs through the adoption of the Nitrates and Urban Waste Water Treatment Directives (1991) and the Water Framework Directive (WFD) 2000.
 Decreases in the loadings of nutrients and organic matter that cause 
eutrophication have been documented in a number of systems in Europe and
 worldwide (Testa et al., 2008, Duarte et al., 2009 and Windolf et al., 2012). However, while measures have been shown to be effective in reducing the use of nitrogen (N) and phosphorus (P) fertiliser (Lalor et al., 2010 and Bouraoui and Grizzetti, 2011) and loss of nutrients from wastewater treatment plants and industrial discharges (Schindler, 2006 and Kronvang et al., 2008), future demands for food production will likely augment the intensity of agricultural practices in many countries.
Following
 the implementation of mitigating measures, recovery of surface waters 
from impairment is expected to vary depending on catchment 
characteristics including forestry cover, agriculture and the degree of 
urbanisation. Furthermore, natural factors such as geology, soils, 
climate, and hydrology will largely determine background water quality 
and legacy accumulation of anthropogenic nutrients in soils (Jordan et al., 2012, Taylor et al., 2012 and Vermaat et al., 2012).
The
 specific response of estuarine and coastal systems to decreases in 
diffuse and point source loads can differ greatly due to their inherent 
chemical, biological and physical gradients and complex biogeochemical 
cycles. Estuaries can act as a source of nutrients, especially P (Deborde et al., 2007 and Van Der Zee et al., 2007) and silica (Legovic et al., 1996 and Cabeçadas et al., 1999), due to organic material recycling, desorption and diffusion of P from sediment pore waters during early digenesis (Deborde et al., 2008 and Delgard et al., 2012).
 Secondly, they may act as a sink or source of N through the balance 
between nitrification–denitrification and ammonification-anammox (Abril et al., 2000, Garnier et al., 2006 and Seitzinger et al., 2006).
 Finally, biological assimilation can also act to filter nutrients as 
they pass through the estuarine system. However, the response of primary
 producers to nutrient availability will depend largely on physical and 
biological constraints such as light, residence time, grazing and ocean 
exchange (Cloern, 2001, Carstensen et al., 2011 and O'Boyle et al., 2015).
 Studies which trace N and P flows from the source to the coastal zone 
allow the determination of not only the effectiveness of mitigation but 
enhance understanding of response trajectories. This will assist in the 
future targeting of actions to be applied specifically in light of 
current and future programmes of measures to be undertaken under the 
Nitrates Directive, WFD, and Marine Strategy Framework Directive (MSFD).
To
 investigate the link between measures and improvements in water 
quality, the Blackwater catchment and estuary in southern Ireland, which
 has seen a substantial enhancement in water quality in the last decade,
 was selected. The trophic status of the estuary, having previously been
 classified as eutrophic by the EPA's Trophic Status Assessment Scheme 
(TSAS), has shown a marked improvement and is now classed as unpolluted 
with respect to eutrophication. Monitoring has been undertaken since 
1990 to track river loads and since 1992 to evaluate the biochemical 
status of the estuarine system. Coupled with this, an assessment of 
nutrient source apportionment in the catchment has been carried out for 
the years 1990, 2000 and 2010. This is done as part of a national source
 apportionment exercise undertaken to meet the reporting requirements of
 the Oslo–Paris Convention on the Protection of the North Eastern 
Atlantic (OSPAR). The combination of these data is now a valuable tool 
which can be used to determine the links between improvements in 
practices and the response of an estuarine and coastal system.
The
 objectives of this study were; 1) to determine whether decreases in 
overall loads and changes in load apportionment to the estuarine 
catchment have occurred in the last 20 years; 2) to examine potential 
links between trends in calculated catchment nutrient loads, measured 
river loads and downstream estuarine concentrations; 3) to determine the
 impacts of any changes on physico-chemical and biological parameters 
within the estuarine system and 4) to identify the measures that have 
been most effective in reducing nutrient loss from the catchment to the 
estuary.
2. Materials and methods
2.1. Study site
The Blackwater Estuary drains a large agricultural basin in southern Ireland with a catchment area of 3307.5 km2.
 Livestock constitute the main farming activity in the area with over 
50% of the agricultural land dedicated to pasture and 30% to the 
production of silage. A number of small towns and villages also occupy 
the catchment while the town of Youghal (treatment population 10,000), 
which lacks a waste water treatment plant, lies at the estuary mouth. 
The south of Ireland is a temperate region, with highest rainfall and 
river flows occurring in the autumn/winter months. Median freshwater 
discharge is 106.6 m3/s, with winter (October–March) flows 
being twice those of the summer periods. The Blackwater Estuary is 
shallow (average depth 4.2 m) and mesotidal with a tidal range of 3.6 m,
 a surface area of 12.1 km2 and an intertidal area of 4.5 km2. The estuary is generally well-mixed although stratification occurs in the mid-estuarine region.
2.2. Catchment nutrient load estimations
The
 quantification of nutrient sources to the Blackwater catchment was 
based on historic reporting procedures which have been undertaken to 
comply with requirements under OSPAR. In order to identify trends, load 
calculations were undertaken for 1990, 2000 and 2010. These years were 
chosen as the largest body of information was available at this time 
step. A detailed account of load calculations for, diffuse (inorganic 
and organic fertilisers, land use, unsewered population) and point 
(waste water treatment plants, industry) sources of nutrients is 
described below. In cases where actual data sets of direct discharges 
and pathway processes are unavailable, coefficients have been applied 
based on commonly agreed methods and previously measured rates (OSPAR, 2011 and O'Sullivan, 2002).
2.2.1. Inorganic and organic fertilisers
Agricultural
 data for farm area usage (cereals, potatoes, silage, hay, pasture) and 
livestock densities (cattle, sheep) were obtained from the Central 
Statistics Office (CSO) of Ireland for the three years and are delimited
 into area per electoral district (ED). National inorganic fertiliser 
application rates of Nitrogen (N) and Phosphorus (P) per land use type 
were sourced from a national farm study (Lalor et al., 2010).
 As the survey only encompasses 1995–2008 the 1995 and 2008 application 
rates were used for 1990 and 2010 respectively. Justification for the 
use of 1995 and 2008 in lieu of 1990 and 2010 is based on the relatively
 small change in recorded fertiliser sales between 1990 and 1995 (2.5% 
increase for N and 0.7% decrease for P) and 2008 and 2010 (2008 
fertiliser sales are within the standard deviation of the sales values 
for 2009–2011 (years used in the comparison of actual river loadings 
with calculated loads) for N (2008 = 309,000 tonnes; 
2009–2011 = 327,670 ± 29,940) and P (2008 = 26,000; 
2009–2011 = 26,000 ± 5200). As fertiliser sales are correlated with 
fertiliser application rates (Lalor et al., 2010)
 it can be assumed that the values used in the study are representative 
of actual application rates. Annual excretion rates per livestock type 
were obtained from the Good Agricultural Practice for Protection of 
Waters S.I. No. 101 of 2009 (Government of Ireland, 2009). The calculation assumes that all excreted N and P are spread on the land during the year.
To
 account for pathways of nutrients from field to surface water, loss 
coefficients were applied for N and P which were adopted from 
agricultural nutrient losses as per the NEUT 99 Screening Procedure for 
Irish Coastal Waters with regard to Eutrophication Status. These 
coefficients were also reported by the EPA to be within the ranges of 
values quoted in PRAM 99/715-E Draft Guidance No. 6.
 The agricultural loss estimates are also comparable with direct 
measurements of export rates in agricultural areas in Ireland obtained 
from catchment monitoring and management programmes (O'Sullivan, 2002).
 It is recognised that this methodology, which estimated that 20% of 
input agricultural N and 4% of input agricultural P reaches water bodies
 in all areas, does not take account of variability in runoff risk 
properties of soils or differences in transport processes relating to 
bedrock or groundwater pathways (Tedd et al., 2014).
2.2.2. Leaching from landcover categories
Land
 cover information was obtained from the European Corine (Coordination 
of Information on the Environment) Land Cover Maps for 1990, 2000, and 
2006 which are produced from satellite imagery. 2006 was used for the 
2010 calculations as data from 2010 was unavailable. Nutrient leaching 
from forestry, peatlands, inland marshes, scrub and different urban 
areas were then estimated using standard coefficients which were 
determined during a study undertaken in Ireland (O'Sullivan, 2002).
2.2.3. Unsewered rural populations
Standard
 nutrient loading factors were utilised to estimate loadings to 
watercourses from rural populations and septic tanks (PRAM 99/715 Draft 
OSPAR Guidelines for harmonization of quantification and reporting 
procedures (N = 9.0 g/person/day, P = 2.7 g/person/day)). In the absence
 of data regarding the location of septic tanks, 50% were assumed as 
standard loss rates and the remaining 50% assumed to be remote from 
watercourses. The unsewered population was calculated by subtracting the
 sewered population (CSO data source) from the total population.
2.2.4. Background losses
Losses
 were estimated on the basis of total catchment area in accordance with 
PRAM 99/7/5-E Draft Guideline No. 6 Annexes I and III. N and P losses 
from background runoff were calculated as 0.75 kg N/ha/y and 0.05 kg 
P/ha/y, respectively. These background rates are comparable with values 
recorded for headwater sites obtained from catchment monitoring and 
management programmes (O'Sullivan, 2002).
 N and P inputs to waters originating from atmospheric deposition to the
 catchment are considered to be accounted for in the background loss 
estimates. Estimates of atmospheric deposition of total oxidized 
nitrogen directly to surface water were determined from the European 
Monitoring and Evaluation Programme Meteorological Synthesising 
Centre-West (EMEP/MSC-W) model results for the three years of the study.
2.2.5. Wastewater treatment plants
Outflow
 from Wastewater Treatment Plants was estimated according to operating 
population equivalent (PE), assumed nutrient production loading 
(N = 9.0 g/person/day, P = 2.7 g/person/day) and reduction factors 
dependant on the level of treatment (PRAM 99/7/5-E Draft Guidance No. 7 
Annex 1 Paragraph 6.3 NEUT Guidelines (Meeting of the Working Group on 
Nutrients and Eutrophication, October 1999)). Reduction factors are 
based on typical water quality data examples (OSPAR, 2011).
 Under estimates of loads can result where treatment plants are not 
operating efficiently while capacity overload at plants resulting in 
overflow of partially treated or untreated effluents can also occur. 
These data were used where actual population served was available
2.2.6. Unsewered industries
Historical
 loading from licenced industries which discharge directly to 
watercourses were estimated as 25% of maximum allowable discharge in 
accordance with PRAM 99/7/5-E Draft Guideline No. 7 Annex 1 Paragraph 
6.7. A compilation of monitoring data on actual emissions from 50 Irish 
companies showed that nearly all companies discharged less than 25% of 
the maximum licenced emission; hence this can be considered a reasonable
 indication of actual emissions (EPA, 2000).
 Loadings have been measured since 2007 in the case of larger industries
 and can now be sourced from the Irish EPA's PRTR (Pollutant Release and
 Transfer Register) database where available.
2.3. River load calculations
Monthly
 nutrient loads to the Blackwater Estuary were calculated from 
measurements undertaken under the OSPAR Riverine Inputs Programme (RID) 
from 1990 to 2011. Instantaneous nutrient concentrations and flow were 
measured monthly to give an instantaneous load. The load was 
flow-weighted by monthly mass flow (measured daily) to give a monthly 
load to the estuary, and all months were then summed to give annual 
loads to the estuary in tonnes. Flow rates were sourced from hydrometric
 data publically available from the Irish EPA HydroNet website 
(hydronet.epa.ie).
2.4. Estuarine monitoring data
The
 EPA has been monitoring the Blackwater Estuary on a seasonal winter 
summer basis since 1997. The data set used incorporates 18 sampling 
stations which are monitored once during winter and 3 times during the 
productive period between May and September (Fig. 1).
 Samples for the analysis of chlorophyll and nutrients were collected 
using a 2-litre Hydrobios Ruttner bottle at the surface and 0.5 m above 
the bottom. Dissolved Oxygen saturation (DO Sat) together with 
temperature, salinity and depth were recorded using a Hydrolab datasonde
 CTD. For practical purposes tidal sampling was scheduled to take place 
in mid- to late morning (8.00–11.00 am) and again in mid- to late 
afternoon (2.00–5.00 pm) to capture tidal variation.
Samples
 for the measurement of chlorophyll, a proxy for phytoplankton biomass, 
were filtered using Whatman GF/C glass fibre filters and stored 
overnight in the dark to prevent photo-degradation. Pigments were 
extracted using hot methanol and absorbance (not corrected for the 
presence of phaeopigments) was measured using a spectrophotometer (Standing Committee of Analysts', 1980).
 Ammonia, total oxidized nitrogen (TON) and molybdate reactive 
phosphorus (MRP) were measured according to Standard Methods for the 
Examination of Water and Wastewater (2005). Water transparency at each 
station was measured using a 25 cm diameter Secchi disc. Estuarine 
parameters (DIN (dissolved inorganic nitrogen), MRP, chlorophyll, N:P 
and DO Sat) were mapped with contouring software using a local 
polynomial grid method (Surfer 11, Golden Software 2012).
